Combining deep neural networks and engineered features for cardiac arrhythmia detection from ECG recordings.

08:00 EDT 3rd April 2019 | BioPortfolio

Summary of "Combining deep neural networks and engineered features for cardiac arrhythmia detection from ECG recordings."

We aim to combine deep neural networks and engineered features (hand-crafted features based on medical domain knowledge) together for cardiac arrhythmia detection from short single lead ECG recordings. Approach: We propose a two-stage method named ENCASE for cardiac arrhythmia detection. The first stage is feature extraction and the second stage is classifier building. In feature extraction stage, we extract both deep features and engineered features. Deep features are obtained by modifying deep neural networks into deep feature extractor. Engineered features are extracted by summarizing existing approaches into four feature groups. Then, we propose a feature aggregation approach to combine these features together. In classifier building stage, we build multiple gradient boosting decision trees and ensemble them together to get the final detector. Results: Experiments are performed on PhysioNet/Computing in Cardiology Challenge 2017 dataset. Using F1 scores reported on hidden test set as measurement, ENCASE got 0.9117 on Normal, 0.8128 on Atrial Fibrillation, 0.7505 on Others and 0.5671 on Noise, which placed 5th in the Challenge and 8th in the follow-up ranked by average of Normal, AF and Others. When rounding to two decimal places, we placed equal 1st with three others in the Challenge and equal 2nd with seven others in the follow-up. Further experiments show that combined features perform better than individual features, and deep features show more importance scores than other features. Significance: ENCASE can benefit from both feature engineering based methods and recent deep neural networks. It is flexible and can easily assimilate the ability of new cardiac arrhythmia detection methods.


Journal Details

This article was published in the following journal.

Name: Physiological measurement
ISSN: 1361-6579


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Medical and Biotech [MESH] Definitions

Agents used for the treatment or prevention of cardiac arrhythmias. They may affect the polarization-repolarization phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibers. Anti-arrhythmia agents are often classed into four main groups according to their mechanism of action: sodium channel blockade, beta-adrenergic blockade, repolarization prolongation, or calcium channel blockade.

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Abnormally rapid heartbeat, usually with a HEART RATE above 100 beats per minute for adults. Tachycardia accompanied by disturbance in the cardiac depolarization (cardiac arrhythmia) is called tachyarrhythmia.

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A potent anti-arrhythmia agent, effective in a wide range of ventricular and atrial arrhythmias and tachycardias. Paradoxically, however, in myocardial infarct patients with either symptomatic or asymptomatic arrhythmia, flecainide exacerbates the arrhythmia and is not recommended for use in these patients.

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