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DeTerm: Software for automatic detection of neuronal dendritic branch terminals via an artificial neural network.

08:00 EDT 16th May 2019 | BioPortfolio

Summary of "DeTerm: Software for automatic detection of neuronal dendritic branch terminals via an artificial neural network."

Dendrites of neurons receive and process synaptic or sensory inputs. The Drosophila class IV dendritic arborization (da) neuron is an established model system to explore molecular mechanisms of dendrite morphogenesis. The total number of dendritic branch terminals is one of the frequently employed parameters to characterize dendritic arborization complexity of class IV neurons. This parameter gives a useful phenotypic readout of arborization during neurogenesis, and it is typically determined by laborious manual analyses of numerous images. Ideally, an automated analysis would greatly reduce the workload; however, it is challenging to automatically discriminate dendritic branch terminals from signals of surrounding tissues in whole-mount live larvae. Here we describe our newly developed software, called DeTerm, which automatically recognizes and quantifies dendrite branch terminals via an artificial neural network. Once we input an image file of a neuronal dendritic arbor and its region of interest information, DeTerm is capable of labeling terminals of larval class IV neurons with high precision, and it also provides positional data of individual terminals. We further show that DeTerm is applicable to other types of neurons, including mouse cerebellar Purkinje cells. DeTerm is freely available on the web, and was successfully tested on Mac, Windows and Linux. This article is protected by copyright. All rights reserved.

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Name: Genes to cells : devoted to molecular & cellular mechanisms
ISSN: 1365-2443
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