Topics

New high-quality draft genome of the brown rot fungal pathogen Monilinia fructicola.

08:00 EDT 27th September 2019 | BioPortfolio

Summary of "New high-quality draft genome of the brown rot fungal pathogen Monilinia fructicola."

Brown rot is a worldwide fungal disease of stone and pome fruit that is caused by several Monilinia species. Among these, Monilinia fructicola can cause severe preharvest and postharvest losses, especially for stone fruit. Here, we present a high-quality draft genome assembly of M. fructicola Mfrc123 strain obtained using both Illumina and PacBio sequencing technologies. The genome assembly comprised 20 scaffolds, including 29 telomere sequences at both ends of 10 scaffolds, and at a single end of nine scaffolds. The total length was 44.05 Mb, with a scaffold N50 of 2,592 Kb. Annotation of the M. fructicola assembly identified a total of 12,118 genes and 13,749 proteins that were functionally annotated. This newly generated reference genome is expected to significantly contribute to comparative analysis of genome biology and evolution within Monilinia species.

Affiliation

Journal Details

This article was published in the following journal.

Name: Genome biology and evolution
ISSN: 1759-6653
Pages:

Links

DeepDyve research library

PubMed Articles [24990 Associated PubMed Articles listed on BioPortfolio]

High-Quality Draft Genome Sequences of Crenobacter cavernae Strain CAVE-375 and Oxalobacteriaceae sp. Strain CAVE-383, Two Bacteria Isolated from Dripping Water in a Karstic Cave in Portugal.

CAVE-375 and sp. strain CAVE-383, two Gram-negative bacteria, were isolated during the first microbiology survey performed in a karst cave in Portugal. We report here the release of their high-qualit...

Transcriptome profiling of the rice blast fungus and its host during infection.

The rice blast (fungal pathogen: and host: ) is the most important model pathosystem to understand plant-microbe interactions. Although both genome sequences were published as the first cases of path...

Draft genome sequence of a clinical Acinetobacter baumannii isolate of new sequence type ST1688 from Saudi Arabia.

Acinetobacter baumannii has emerged as a most prevalent multidrug-resistant nosocomial pathogen worldwide. In this study, we report the draft genome sequence of A. baumannii strain Ab174 isolated from...

A chromosome-scale genome assembly of cucumber (Cucumis sativus L.).

Accurate and complete reference genome assemblies are fundamental for biological research. Cucumber is an important vegetable crop and model system for sex determination and vascular biology. Low-cove...

Draft genome sequence data of maqui and identification of SSR markers.

Maqui ( [Molina] Stunz) is a small dioecious tree, belonging to the Elaeocarpaceae family. Maqui fruit has high levels of antioxidant activity, which are due to elevated anthocyanin and polyphenol con...

Clinical Trials [8022 Associated Clinical Trials listed on BioPortfolio]

Fungal Infections in Patients With Hematological Malignancies

* Report the prevalence of fungal infections among patients with hematological malignancies in South Egypt Cancer Institute. * Detect the most endemic fungal pathogen isolated from patient...

Evaluation of NGS for Detection and Follow-up of Fungal Pathogens in Immunocompromised Pediatric Patients

We hypothesize that Next-generation Sequencing (NGS) can identify fungal pathogens, is more accurate than other noninvasive options and can report fungal genomic load.

Molecular Characterization of Candida Auris

Candida auris is emerging fungal opportunistic pathogen in developing countries. Much studies has been conducted on Candida albicans. there was a dire need to investigate this alarming thr...

An Observational Study of Fungal Biomarkers

The purpose of this study is to evaluate the relationship between fungal biomarker levels during anti-fungal therapy and the success of treatment for fugal infection

Systemic Fungal Infections in ICU Patients

This study aims to : 1. Diagnosis of Systemic fungal infections in ICU patients. 2. Detection the most common fungal species in ICU. 3. Detection of in vitro antifungal sens...

Medical and Biotech [MESH] Definitions

Fungal pathogen which causes Soybean Rust disease in Soybeans (Glycine max).

The complete gene complement contained in a set of chromosomes in a fungus.

A mitosporic Ceratobasidiaceae fungal genus that is an important plant pathogen affecting potatoes and other plants. There are numerous teleomorphs.

A method of producing a high-quality scan by digitizing and subtracting the images produced by high- and low-energy x-rays.

A mitosporic fungal genus. Teleomorphs are found in the family Clavicipitaceae and include Cordyceps bassiana. The species Beauveria bassiana is a common pathogen of ARTHROPODS and is used in PEST CONTROL.

Quick Search


DeepDyve research library

Relevant Topics

Bioinformatics
Bioinformatics is the application of computer software and hardware to the management of biological data to create useful information. Computers are used to gather, store, analyze and integrate biological and genetic information which can then be applied...

DNA sequencing
DNA sequencing is the process of determining the precise order of nucleotides within a DNA molecule. During DNA sequencing, the bases of a small fragment of DNA are sequentially identified from signals emitted as each fragment is re-synthesized from a ...


Searches Linking to this Article