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grabseqs: Simple downloading of reads and metadata from multiple next-generation sequencing data repositories.

08:00 EDT 10th March 2020 | BioPortfolio

Summary of "grabseqs: Simple downloading of reads and metadata from multiple next-generation sequencing data repositories."

High-throughput sequencing is a powerful technique for addressing biological questions. Grabseqs streamlines access to publicly available metagenomic data by providing a single, easy-to-use interface to download data and metadata from multiple repositories including the Sequence Read Archive (SRA), the Metagenomics Rapid Annotation through Subsystems Technology (MG-RAST) server, and iMicrobe. Users can download data and metadata in a standardized format from any number of samples or projects from a given repository with a single grabseqs command.

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Name: Bioinformatics (Oxford, England)
ISSN: 1367-4811
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