HiChIP-Peaks: A HiChIP peak calling algorithm.

08:00 EDT 24th March 2020 | BioPortfolio

Summary of "HiChIP-Peaks: A HiChIP peak calling algorithm."

HiChIP is a powerful tool to interrogate 3D chromatin organization. Current tools to analyse chromatin looping mechanisms using HiChIP data require the identification of loop anchors to work properly. However, current approaches to discover these anchors from HiChIP data are not satisfactory, having either a very high false discovery rate or strong dependence on sequencing depth. Moreover, these tools do not allow quantitative comparison of peaks across different samples, failing to fully exploit the information available from HiChIP datasets.


Journal Details

This article was published in the following journal.

Name: Bioinformatics (Oxford, England)
ISSN: 1367-4811


DeepDyve research library

PubMed Articles [4040 Associated PubMed Articles listed on BioPortfolio]

Determining the probability of locating peaks using computerized peak-location methods in gamma-ray spectra as a function of the relative peak-area uncertainty.

The probabilities of locating peaks with a high relative peak-area uncertainty were determined empirically with nine types of peak-location software used in laboratories engaged in gamma-ray spectrome...

An Automatic R and T peak Detection Method Based on the Combination of Hierarchical Clustering and Discrete Wavelet Transform.

The detection and delineation of QRS-complexes and T-waves in electrocardiogram (ECG) is an important task because these features are associated with the cardiac abnormalities including ventricular ar...

Testing whether stutter and low-level DNA peaks are additive.

Peaks in an electropherogram could represent alleles, stutter product, or a combination of allele and stutter. Continuous probabilistic genotyping (PG) systems model the heights of peaks in an additiv...

Extending the power transform approach for recovering areas of overlapping peaks.

Power functions, p (x) = [f(x)] , are embedded in some modern chromatography detectors and software which not only alter the linear dynamic range of such detectors but also improve the cosmetic aspect...

Deep learning for the precise peak detection in high-resolution LC-MS data.

This article is devoted to the application of machine learning, namely convolutional neural networks to solve problems in the initial steps of the common pipeline for data analysis in metabolomics. Th...

Clinical Trials [1530 Associated Clinical Trials listed on BioPortfolio]

Ectopic Pregnancy Biomarkers

In an attempt to simplify the diagnosis of ectopic pregnancy, the researchers will investigate the presence of specific molecular markers of ectopic pregnancy. The quantification of these...

Phase I: At-Home Support for Rural Women Using Group Video Calling

This randomized phase I trial studies at-home group video calling sessions in quality of life in rural patients with breast cancer. At-home group video calling support sessions may improve...

Asthma & Exposure to Peaks in Particulate Air Pollution

We are testing the following two hypotheses: 1) Peaks in hourly exposures to airborne particulate matter (PM) of outdoor origin will be more closely associated with acute asthmatic respons...

Study of Post-Meal Blood Sugar Peaks in Association With Vascular Disease in Childhood Obesity

The reason for doing this study is to find out if children/adolescents/young adults who do not have diabetes, have high blood sugar peaks after drinking a sugary drink or eating a full mea...

Validation of a Quantra Supported Hemotherapy Algorithm in Cardiac Surgery

The aim of this study is to develop a coagulation algorithm based on Quantra POCT for the treatment of coagulopathic cardiac surgery patients.

Medical and Biotech [MESH] Definitions

Persons that live and work according to a religious vocation, or calling, to a consecrated or ordained life.

Tomography using x-ray transmission and a computer algorithm to reconstruct the image.

The act or practice of calling public attention to a product, service, need, etc., especially by paid announcements in newspapers, magazines, on radio, or on television. (Random House Unabridged Dictionary, 2d ed)

Large, hoofed mammals of the family EQUIDAE. Horses are active day and night with most of the day spent seeking and consuming food. Feeding peaks occur in the early morning and late afternoon, and there are several daily periods of rest.

A ferroin compound that forms a stable magenta-colored solution with the ferrous ion. The complex has an absorption peak at 562 nm and is used as a reagent and indicator for iron.

Quick Search

DeepDyve research library

Relevant Topic

DNA sequencing
DNA sequencing is the process of determining the precise order of nucleotides within a DNA molecule. During DNA sequencing, the bases of a small fragment of DNA are sequentially identified from signals emitted as each fragment is re-synthesized from a ...

Searches Linking to this Article