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PubMed Journal Database | Data in brief RSS

06:56 EDT 26th March 2019 | BioPortfolio

The US National Library of Medicine and National Institutes of Health manage PubMed.gov which comprises of more than 29 million records, papers, reports for biomedical literature, including MEDLINE, life science and medical journals, articles, reviews, reports and  books.

BioPortfolio aims to cross reference relevant information on published papers, clinical trials and news associated with selected topics - speciality.

For example view all recent relevant publications on Epigenetics and associated publications and clincial trials.

Showing PubMed Articles 1–25 of 171 from Data in brief

Data on U.S. state-level electric vehicle policies, 2010-2015.

This data set documents the duration and value of U.S. state and local electric vehicle (EV) policies in effect from 2010 to 2015. Though the focus is on policies at the state-level, local government and electric utility policies are documented when they collectively cover a majority of the state׳s population or electricity customers. Data were collected first from the Alternative Fuel Database Center (AFDC), then supplemented with information taken from more than 300 government (state, city, and county) a...

Dataset on growth curves of Boer goats fitted by ten non-linear functions.

Data on the description of growth of female Boer goats from the Mexican national breeding flock are presented. Goat meat is highly appreciated for the preparation of traditional dishes of Mexican cuisine, and its demand is on the rise. Boer goats are of relatively recent arrival in Mexico and the size of the performance-recorded flock has been increasing steadily in the last ten years. Repeated measures of body weight at different ages from birth to adulthood of Boer goats are scarce. When available, such d...

Experimental dataset on electrolyte mixtures containing fluoroethylene carbonate and lithium bis(trifluoromethanesulfonyl)imide.

These data and analyses support the research article "Low-flammable electrolytes with fluoroethylene carbonate based solvent mixtures and lithium bis(trifluoromethanesulfonyl)-imide (LiTFSI) for lithium-ion batteries" [1]. The data and analyses presented here include fitted data for density measurements, temperature dependence of density and specific volume of the mixtures, detailed viscosity measurements and conductivity data, current density plots with respect to anodic aluminum dissolution, half-cell C-r...

Cyclic voltammetry data of polypyridine ligands and Co(II)-polypyridine complexes.

The data presented in this article is related to the research article entitled "Electrochemical and electronic properties of a series of substituted polypyridine ligands and their Co(II) complexes" (Ferreira et al., 2019). This data article presents electrochemical data of five polypyridine ligands, as well as of the three redox couples of each of their corresponding five polypyridine-containing Co(II) complexes. All complexes exhibit two Co-based redox couples (Co and Co), as well as a ligand-based reducti...

Data from the electronic band structures of several Zintl phases with group 15 elements and the transition metals.

Electronic band structures of the following compounds - CsCd(As), KPdP, KCuAs, NaCuP and KCuP - all computed by means of the TB-LMTO-ASA code. The calculations show that for all compounds, the bonding states are occupied, while the antibonding orbitals are vacant. This confirms the partitioning of the valence electrons according to the Zintl-Klemm formalism. doi.org/10.1016/j.jssc.2018.11.029 (Ovchinnikov and Bobev, 2019) [1].

Data on environmental sustainable corrosion inhibitor for stainless steel in aggressive environment.

This data article contains data related to the research article entitled "enhanced corrosion resistance of stainless steel Type 316 in sulphuric acid solution using eco-friendly waste product" (Sanni et al., 2018). In this data article, a comprehensive effect of waste product and optimized process parameter of the inhibitor in 0.5 M HSO solution was presented using weight loss and potentiodynamic polarization techniques. The presence of the inhibitor (egg shell powder) influenced corrosion resistance of s...

Horseshoe crab bio-ecological data from Balok, East Coast Peninsular Malaysia.

The data available in this repository were gathered from Balok, the only most productive spawning site for horseshoe crabs and in East Coast of Peninsular Malaysia. The mangrove horseshoe crab, population and spawning data are available in the first table. The horseshoe crabs were retrieved from Balok River using 11.43 cm mesh size gill nets installed at the river mouth, the confluence and last meander. The arthropods were inspected for damage, abnormality and growth before their release into Balok Riv...

Datasets on extinction coefficients for free space optical link survey and optimization.

Based on visibilities data recorded from 2004 to 2013, the minimum, maximum and mean values of extinction coefficients were determined and analyzed in a monthly basis, a yearly basis and also for the whole period of observation. The extinction coefficients data are obtained for the 1330 and 1550 nm optical wavelengths and may be used inter alia for range and availability analyses of optical link for different weather conditions. The data are collected in the region of Dakar, but approach and model of inve...

FABP4 inhibitors 3D-QSAR model and isosteric replacement of BMS309403 datasets.

The data have been obtained from FABP4 inhibitor molecules previously published. The 120 compounds were used to build a 3D-QSAR model. The development of the QSAR model has been undertaken with the use of Forge software using the PM3 optimized structure and the experimental IC of each compound. The QSAR model was also employed to predict the activity of 3000 new isosteric derivatives of BMS309403. The isosteric replacement was also validated by the synthesis and the biological screening of three new compoun...

A benchmark dataset for the multiple depot vehicle scheduling problem.

This data article presents a description of a benchmark dataset for the multiple depot vehicle scheduling problem (MDVSP). The MDVSP is to assign vehicles from different depots to timetabled trips to minimize the total cost of empty travel and waiting. The dataset has been developed to evaluate the heuristics of the MDVSP that are presented in "A new formulation and a column generation-based heuristic for the multiple depot vehicle scheduling problem" (Kulkarni et al., 2018). The dataset contains 60 problem...

Genomes of three bacteriophages from the deep subsurface aquifer.

Viral particles have been detected in the underground biosphere where they could be one of the main factors impacting microbial diversity, biogeochemistry and evolution. To characterize the viral component in the deep subsurface biosphere, we sequenced the metagenome of subsurface aquifer located in the Tomsk region of Russia, sampled via 2.8-km-deep borehole 5P. The assembly of metagenomics sequences yielded three circular genomes assigned to bacteriophages of the order . The annotated genome sequences of...

Data on mutations and Clinical features in SCN1A or SCN2A gene.

Mutations in and are associated with a wide spectrum of epilepsy related disorders in human. This dataset presented variants and clinical features of SCN1A and SCN2A genes. A total of 48 cases were presented, including 33 mutations and 14 mutations. While 22 mutations were novel in and 11 were novel in . The clinical features were included of gender, birth history, family history, seizure onset age, seizure types, frequency of seizures, initial and follow-up EEGs, brain MRI findings, antiepileptic drug...

Dataset on significant role of Candesartan on cognitive functions in rats having memory impairment induced by electromagnetic waves.

Rapid growing of mobile phones users has raised about the possible effects of these electromagnetic waves (EMW) on human health. Many studies have examined the role of these EMW on biological systems, but the results are still contradictory and controversial. In addition to EMW, over-activation of angiotensin type 1 receptor (AT1R) has been associated with cognitive decline, incidence and progression of neurodegenerative diseases. Candesartan, an AT1R blocker, is well recognized for treatment of hypertensio...

Data on hypoxia-induced VEGF, leptin and NF-kB p65 expression.

The data set presented here is associated with the article "Intracellular calcium and NF-B regulate hypoxia-induced leptin, VEGF, IL-6 and adiponectin secretion in human adipocytes" (Al-Anazi et al., 2018). Data illustrate hypoxia-induced VEGF and leptin expression in human adipocytes treated with the calcium chelator BAPTA-AM (1 µM). It also shows NF-κB p65 induced expression by hypoxia. Preadipocytes were differentiated for 14 days and then subjected to 0.5-1.5% oxygen in the presence and absence of B...

Data in support for the measurement of heparan sulfate and dermatan sulfate by LC-MS/MS analysis.

This article provides supplementary data for the paper "LC-MS/MS method for simultaneous quantification of heparan sulfate and dermatan sulfate in urine by butanolysis derivatization" (Forni et al., 2018). Several parameters were tested to optimize sample preparation by butanolysis in order to carry out simultaneous quantifications of HS and DS by tandem mass spectrometry. Here we describe step-by-step instructions to perform HS and DS analysis in urine samples using external calibration curves of standards...

Data on post-partum evaluation of women with abnormal cervical cytology in pregnancy.

During pregnancy, the only diagnosis that may alter management is invasive cancer. Thus, the primary aim of the cytological screening and subsequent colposcopy performed during pregnancy should be the exclusion of invasive cancer, "Practice Bulletin No. 140: management of abnormal cervical cancer screening test results and cervical cancer precursors," (American College of Obstetricians and Gynecologists, 2013) [1]. However, the impact of the delivery on the regression of the cervical lesions is still debate...

Draft genome sequence of the moderately halophilic bacterium sp. BBL2006.

We present the draft genome sequence of sp. BBL2006, a moderately halophilic, gram positive bacterium isolated from a sulfidic salt spring in Big Bone Lick State Park, Boone County, Kentucky. The genome of sp. BBL2006 was 3,988,138 bp in length with a GC content of 41.6%. Genome analysis identified 4331 open reading frames including genes for antibiotic resistance and tolerance to heavy metals. The draft genome was deposited at DDBJ/EMBL/GenBank (DNA Databank of Japan/European Molecular Biology Laborato...

Electronic nose dataset for beef quality monitoring in uncontrolled ambient conditions.

In recent years, the development of a rapid, simple, and low-cost meat assessment system using an electronic nose (e-nose) has been the concern of researchers. In this data article, we provide a time series dataset that was obtained from a beef quality monitoring experiment using an e-nose in uncontrolled ambient conditions. The availability of this dataset will enable discussion on how to deal with noisy e-nose signals and non-optimum sensor array in beef quality monitoring. Hence, the development of prope...

Data for quantum phonon transport in strained carbon atomic chains bridging graphene and graphene nanoribbon electrodes.

The data presented in this article are related to "Odd-even phonon transport effects in strained carbon atomic chains bridging graphene nanoribbon electrodes" (Kim et al., 2019). To provide the information that can be utilized in reproducing our results, we provide the fully optimized graphene nanoribbon (GNR)-carbon chain (CC)-GNR junction atomic configurations at different strain values, the computational setting for quantum phonon transport calculations, and several computational data that were not inclu...

Dataset of single bacteria cells with different antibiotic susceptibility obtained by Raman spectroscopy.

This data article contains Raman experimental data, obtained with Horiba Jobin-Yvon LabRam HR800 spectrometer (Japan), which can be used for rapid identification of () bacteria (Beijing clade) . Data present analyzed Raman spectra of bacterial cells with various drug resistances obtained from pulmonary and extra pulmonary samples. Data can provide information about characteristic maxima of different structures in biological cell.

Data on retinoic acid and reduced serum concentration induced differentiation of Neuro-2a neuroblastoma cells.

The present data describe the relative neuro-2a cellular differentiation induced by reducing serum concentration (0.1% FBS) in DMEM in the presence/absence of 20 μM retinoic acid (RA). Neurite outgrowth was observed within 24 h in DMEM supplemented with reduced serum and retinoic acid (GpIV). The CFSE based proliferation assay data signified cessation of neuro-2a cellular proliferation in GpIV. An increase in the number of cells arrested at G/G phase was also evident in GpIV and DMEM supplemented with ...

A data article on E-supply chain benefits from supplier׳s perspective.

This data article provides numeric values about one of the most important sectors in Dubai, Dubai Central Fruit and Vegetable Market (DCM), which attracted world attention through its solid infrastructure and outstanding business environment. The dataset has been collected using a questionnaire obtained from the operational managers in the selected market, and several ethical considerations during the data collection process have been applied to assure the quality and credibility of the obtained data. A str...

Experimentally determined trace element partition coefficients between hibonite, melilite, spinel, and silicate melts.

This article provides new data on mineral/melt partitioning in systems relevant to the evolution of chondrites, Calcium Aluminum-Rich Inclusions (CAI) in chondrites and related meteorites. The data set includes experimentally determined mineral/melt partition coefficients between hibonite (CaAlO), melilite (Ca(Al,Mg)SiO), spinel (MgAlO) and silicate melts for a wide range of trace elements: Sc, Ti, V, Cr, Co, Ni, Cu, Zn, Ga, Ge, Rb, Sr, Y, Zr, Nb, Rh, Cs, Ba, La, Ce, r, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Y...

Data set for characterization of TNF-α-inducible glycosphingolipids in vascular endothelial cells.

The data presented here pertain to a research article entitled "Structural characterization and dynamics of globotetraosylceramide in vascular endothelial cells under TNF-α stimulation" (Okuda et al., 2010). The present article provides additional structural and gene expression data for the characterization of a TNF-α-inducible glycosphingolipid, globotetraosylceramide (Gb4), in vascular endothelial cells. (i) Structural details of Gb4 in lipid raft-enriched cell membranes were determined by MALDI-TOF MS....

Regulatory performance dataset constructed from U.S. soil jurisdictions based on the top 100 concerned pollutants.

The regulatory performance dataset based on the standard-value-based comparison tool was summarized in this Data in Brief. The dataset includes the identified top 100 concerned soil pollutants, the computed C-C regulatory performance scores for each state soil jurisdiction, and the reference sources of the soil regulatory guidance values (RGVs). A total of 20 elements, seven cyanides, five halogenated methanes, seven chloroethanes and choroethenes, 12 benzenes, eight phenols, eight carcinogenic PAHs, eight ...


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